PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00008945-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family bHLH
Protein Properties Length: 355aa    MW: 39808.1 Da    PI: 8.4491
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00008945-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.92.1e-09180227455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  WALNUT_00008945-RA 180 SHSLAERVRREKISERMKILQRLVPGC----DKVTGKALMLDEIINYVQSLQ 227
                         8*************************9....555*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.75E-10174231No hitNo description
SuperFamilySSF474595.23E-17174243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.739176226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-16176241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-6180227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-10182232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MAAFSYQHQP FLLDSIFLPN TPIKMSSLVE EENININYFS QFYPLEPTQE IPVDDISVRE  60
SNCFDHSSKG AFSDNEPSLA KKQSTESSTV VDKLDSGEQV TQKVTPMEKK RKTRNGVSLT  120
TAQSKDPTEG KNKKQKRWNG ALKEEAKKPK AEKKDQKKVS EEPPTGYIHV RARRGQATDS  180
HSLAERVRRE KISERMKILQ RLVPGCDKVT GKALMLDEII NYVQSLQNQV EFLSMKLASV  240
NPMFYDYGMD LDGLIVRPER LTSMQQQITM ASPLPSVTQC SLTQPTGFGQ TPTASAFTTA  300
NNYPITNNSA SLLLQPGQRP NAFPQDIAGI FCEAEDHRQK FLNPSGLSNN LCFLH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007038100.11e-159Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 1
RefseqXP_007038101.11e-159Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 1
TrEMBLA0A061G0911e-159A0A061G091_THECC; Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 1
STRINGVIT_17s0000g00430.t011e-143(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41823358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.21e-63bHLH family protein